org.hl7.fhir.r4.model

Class Sequence.SequenceStructureVariantComponent

java.lang.Object

org.hl7.fhir.r4.model.Base

org.hl7.fhir.r4.model.Element

org.hl7.fhir.r4.model.BackboneElement

org.hl7.fhir.r4.model.Sequence.SequenceStructureVariantComponent

All Implemented Interfaces:

ca.uhn.fhir.model.api.IElement, Serializable, org.hl7.fhir.instance.model.api.IBase, org.hl7.fhir.instance.model.api.IBaseBackboneElement, org.hl7.fhir.instance.model.api.IBaseElement, org.hl7.fhir.instance.model.api.IBaseHasExtensions, org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions

Enclosing class:

Sequence

public static class Sequence.SequenceStructureVariantComponent
extends BackboneElement
implements org.hl7.fhir.instance.model.api.IBaseBackboneElement

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected Sequence.SequenceStructureVariantInnerComponent	inner Structural variant inner.
protected IntegerType	length Length of the variant choromosome.
protected Sequence.SequenceStructureVariantOuterComponent	outer Structural variant outer.
protected StringType	precision Identify the exact boundaries of variant sequences.
protected DecimalType	reportedaCGHRatio Structural Variant reported aCGH ratio.

Fields inherited from class org.hl7.fhir.r4.model.BackboneElement

modifierExtension

Fields inherited from class org.hl7.fhir.r4.model.Element

extension, id

Constructor Summary

Constructors

Constructor and Description
SequenceStructureVariantComponent() Constructor

Method Summary

Modifier and Type	Method and Description
Base	addChild(String name)
Sequence.SequenceStructureVariantComponent	copy()
boolean	equalsDeep(Base other_)
boolean	equalsShallow(Base other_)
String	fhirType()
Sequence.SequenceStructureVariantInnerComponent	getInner()
int	getLength()
IntegerType	getLengthElement()
Property	getNamedProperty(int _hash, String _name, boolean _checkValid)
Sequence.SequenceStructureVariantOuterComponent	getOuter()
String	getPrecision()
StringType	getPrecisionElement()
Base[]	getProperty(int hash, String name, boolean checkValid)
BigDecimal	getReportedaCGHRatio()
DecimalType	getReportedaCGHRatioElement()
String[]	getTypesForProperty(int hash, String name)
boolean	hasInner()
boolean	hasLength()
boolean	hasLengthElement()
boolean	hasOuter()
boolean	hasPrecision()
boolean	hasPrecisionElement()
boolean	hasReportedaCGHRatio()
boolean	hasReportedaCGHRatioElement()
boolean	isEmpty()
protected void	listChildren(List<Property> children)
Base	makeProperty(int hash, String name)
Sequence.SequenceStructureVariantComponent	setInner(Sequence.SequenceStructureVariantInnerComponent value)
Sequence.SequenceStructureVariantComponent	setLength(int value)
Sequence.SequenceStructureVariantComponent	setLengthElement(IntegerType value)
Sequence.SequenceStructureVariantComponent	setOuter(Sequence.SequenceStructureVariantOuterComponent value)
Sequence.SequenceStructureVariantComponent	setPrecision(String value)
Sequence.SequenceStructureVariantComponent	setPrecisionElement(StringType value)
Base	setProperty(int hash, String name, Base value)
Base	setProperty(String name, Base value)
Sequence.SequenceStructureVariantComponent	setReportedaCGHRatio(BigDecimal value)
Sequence.SequenceStructureVariantComponent	setReportedaCGHRatio(double value)
Sequence.SequenceStructureVariantComponent	setReportedaCGHRatio(long value)
Sequence.SequenceStructureVariantComponent	setReportedaCGHRatioElement(DecimalType value)

Methods inherited from class org.hl7.fhir.r4.model.BackboneElement

addModifierExtension, addModifierExtension, checkNoModifiers, copyValues, getModifierExtension, getModifierExtensionFirstRep, hasModifierExtension, setModifierExtension

Methods inherited from class org.hl7.fhir.r4.model.Element

addExtension, addExtension, addExtension, copyValues, getExtension, getExtensionByUrl, getExtensionFirstRep, getExtensionsByUrl, getExtensionString, getId, getIdBase, getIdElement, hasExtension, hasExtension, hasId, hasIdElement, isDisallowExtensions, noExtensions, setDisallowExtensions, setExtension, setId, setIdBase, setIdElement

Methods inherited from class org.hl7.fhir.r4.model.Base

castToAddress, castToAnnotation, castToAttachment, castToBase64Binary, castToBoolean, castToCanonical, castToCode, castToCodeableConcept, castToCoding, castToContactDetail, castToContactPoint, castToContributor, castToDataRequirement, castToDate, castToDateTime, castToDecimal, castToDosage, castToDuration, castToElementDefinition, castToExtension, castToHumanName, castToId, castToIdentifier, castToInstant, castToInteger, castToMarkdown, castToMarketingStatus, castToMeta, castToMoney, castToNarrative, castToOid, castToParameterDefinition, castToPeriod, castToPositiveInt, castToProdCharacteristic, castToProductShelfLife, castToQuantity, castToRange, castToRatio, castToReference, castToRelatedArtifact, castToResource, castToSampledData, castToSignature, castToSimpleQuantity, castToString, castToSubstanceAmount, castToTime, castToTiming, castToTriggerDefinition, castToType, castToUnsignedInt, castToUri, castToUrl, castToUsageContext, castToXhtml, castToXhtmlString, children, clearUserData, compareDeep, compareDeep, compareDeep, compareValues, compareValues, equals, getChildByName, getFormatCommentsPost, getFormatCommentsPre, getNamedProperty, getUserData, getUserInt, getUserString, hasFormatComment, hasPrimitiveValue, hasType, hasUserData, isBooleanPrimitive, isMetadataBased, isPrimitive, isResource, listChildrenByName, listChildrenByName, primitiveValue, setUserData, setUserDataINN

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hl7.fhir.instance.model.api.IBase

getFormatCommentsPost, getFormatCommentsPre, hasFormatComment

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasExtensions

addExtension, getExtension, hasExtension

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions

addModifierExtension, getModifierExtension, hasModifierExtension

Field Detail

precision

protected StringType precision

Identify the exact boundaries of variant sequences. Each type of structure variant requires the DNA duplex to be broken and rejoined, and this creates a new sequence of bases at the rejoined sites, known as breakpoints or boundaries.

reportedaCGHRatio

protected DecimalType reportedaCGHRatio

Structural Variant reported aCGH ratio.

length

protected IntegerType length

Length of the variant choromosome.

outer

protected Sequence.SequenceStructureVariantOuterComponent outer

Structural variant outer.

inner

protected Sequence.SequenceStructureVariantInnerComponent inner

Structural variant inner.

Constructor Detail

SequenceStructureVariantComponent

public SequenceStructureVariantComponent()

Constructor

Method Detail

getPrecisionElement

public StringType getPrecisionElement()

Returns:

precision (Identify the exact boundaries of variant sequences. Each type of structure variant requires the DNA duplex to be broken and rejoined, and this creates a new sequence of bases at the rejoined sites, known as breakpoints or boundaries.). This is the underlying object with id, value and extensions. The accessor "getPrecision" gives direct access to the value

hasPrecisionElement

public boolean hasPrecisionElement()

hasPrecision

public boolean hasPrecision()

setPrecisionElement

public Sequence.SequenceStructureVariantComponent setPrecisionElement(StringType value)

Parameters:

value - precision (Identify the exact boundaries of variant sequences. Each type of structure variant requires the DNA duplex to be broken and rejoined, and this creates a new sequence of bases at the rejoined sites, known as breakpoints or boundaries.). This is the underlying object with id, value and extensions. The accessor "getPrecision" gives direct access to the value

getPrecision

public String getPrecision()

Returns:

Identify the exact boundaries of variant sequences. Each type of structure variant requires the DNA duplex to be broken and rejoined, and this creates a new sequence of bases at the rejoined sites, known as breakpoints or boundaries.

setPrecision

public Sequence.SequenceStructureVariantComponent setPrecision(String value)

Parameters:

value - Identify the exact boundaries of variant sequences. Each type of structure variant requires the DNA duplex to be broken and rejoined, and this creates a new sequence of bases at the rejoined sites, known as breakpoints or boundaries.

getReportedaCGHRatioElement

public DecimalType getReportedaCGHRatioElement()

Returns:

reportedaCGHRatio (Structural Variant reported aCGH ratio.). This is the underlying object with id, value and extensions. The accessor "getReportedaCGHRatio" gives direct access to the value

hasReportedaCGHRatioElement

public boolean hasReportedaCGHRatioElement()

hasReportedaCGHRatio

public boolean hasReportedaCGHRatio()

setReportedaCGHRatioElement

public Sequence.SequenceStructureVariantComponent setReportedaCGHRatioElement(DecimalType value)

Parameters:

value - reportedaCGHRatio (Structural Variant reported aCGH ratio.). This is the underlying object with id, value and extensions. The accessor "getReportedaCGHRatio" gives direct access to the value

getReportedaCGHRatio

public BigDecimal getReportedaCGHRatio()

Returns:

Structural Variant reported aCGH ratio.

setReportedaCGHRatio

public Sequence.SequenceStructureVariantComponent setReportedaCGHRatio(BigDecimal value)

Parameters:

value - Structural Variant reported aCGH ratio.

setReportedaCGHRatio

public Sequence.SequenceStructureVariantComponent setReportedaCGHRatio(long value)

Parameters:

value - Structural Variant reported aCGH ratio.

setReportedaCGHRatio

public Sequence.SequenceStructureVariantComponent setReportedaCGHRatio(double value)

Parameters:

value - Structural Variant reported aCGH ratio.

getLengthElement

public IntegerType getLengthElement()

Returns:

length (Length of the variant choromosome.). This is the underlying object with id, value and extensions. The accessor "getLength" gives direct access to the value

hasLengthElement

public boolean hasLengthElement()

hasLength

public boolean hasLength()

setLengthElement

public Sequence.SequenceStructureVariantComponent setLengthElement(IntegerType value)

Parameters:

value - length (Length of the variant choromosome.). This is the underlying object with id, value and extensions. The accessor "getLength" gives direct access to the value

getLength

public int getLength()

Returns:

Length of the variant choromosome.

setLength

public Sequence.SequenceStructureVariantComponent setLength(int value)

Parameters:

value - Length of the variant choromosome.

getOuter

public Sequence.SequenceStructureVariantOuterComponent getOuter()

Returns:

outer (Structural variant outer.)

hasOuter

public boolean hasOuter()

setOuter

public Sequence.SequenceStructureVariantComponent setOuter(Sequence.SequenceStructureVariantOuterComponent value)

Parameters:

value - outer (Structural variant outer.)

getInner

public Sequence.SequenceStructureVariantInnerComponent getInner()

Returns:

inner (Structural variant inner.)

hasInner

public boolean hasInner()

setInner

public Sequence.SequenceStructureVariantComponent setInner(Sequence.SequenceStructureVariantInnerComponent value)

Parameters:

value - inner (Structural variant inner.)

listChildren

protected void listChildren(List<Property> children)

Overrides:

listChildren in class BackboneElement

getNamedProperty

public Property getNamedProperty(int _hash,
                                 String _name,
                                 boolean _checkValid)
                          throws org.hl7.fhir.exceptions.FHIRException

Overrides:

getNamedProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

getProperty

public Base[] getProperty(int hash,
                          String name,
                          boolean checkValid)
                   throws org.hl7.fhir.exceptions.FHIRException

Overrides:

getProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

setProperty

public Base setProperty(int hash,
                        String name,
                        Base value)
                 throws org.hl7.fhir.exceptions.FHIRException

Overrides:

setProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

setProperty

public Base setProperty(String name,
                        Base value)
                 throws org.hl7.fhir.exceptions.FHIRException

Overrides:

setProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

makeProperty

public Base makeProperty(int hash,
                         String name)
                  throws org.hl7.fhir.exceptions.FHIRException

Overrides:

makeProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

getTypesForProperty

public String[] getTypesForProperty(int hash,
                                    String name)
                             throws org.hl7.fhir.exceptions.FHIRException

Overrides:

getTypesForProperty in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

addChild

public Base addChild(String name)
              throws org.hl7.fhir.exceptions.FHIRException

Overrides:

addChild in class BackboneElement

Throws:

org.hl7.fhir.exceptions.FHIRException

copy

public Sequence.SequenceStructureVariantComponent copy()

Specified by:

copy in class BackboneElement

equalsDeep

public boolean equalsDeep(Base other_)

Overrides:

equalsDeep in class BackboneElement

equalsShallow

public boolean equalsShallow(Base other_)

Overrides:

equalsShallow in class BackboneElement

isEmpty

public boolean isEmpty()

Specified by:

isEmpty in interface org.hl7.fhir.instance.model.api.IBase

Overrides:

isEmpty in class BackboneElement

fhirType

public String fhirType()

Overrides:

fhirType in class BackboneElement