SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent (org.hl7.fhir.r4 5.4.0 API)

java.lang.Object
- org.hl7.fhir.r4.model.Base
- - org.hl7.fhir.r4.model.Element
  - - org.hl7.fhir.r4.model.BackboneElement
    - - org.hl7.fhir.r4.model.SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent

All Implemented Interfaces:

ca.uhn.fhir.model.api.IElement, Serializable, org.hl7.fhir.instance.model.api.IBase, org.hl7.fhir.instance.model.api.IBaseBackboneElement, org.hl7.fhir.instance.model.api.IBaseElement, org.hl7.fhir.instance.model.api.IBaseHasExtensions, org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions

Enclosing class:

SubstanceNucleicAcid
```
public static class SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent
extends BackboneElement
implements org.hl7.fhir.instance.model.api.IBaseBackboneElement
```
See Also:

Serialized Form

Field Summary

Fields
Modifier and Type	Field and Description
`protected CodeableConcept`	`fivePrime` The nucleotide present at the 5’ terminal shall be specified based on a controlled vocabulary.
`protected IntegerType`	`length` The length of the sequence shall be captured.
`protected List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent>`	`linkage` The linkages between sugar residues will also be captured.
`protected StringType`	`sequence` Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes.
`protected Attachment`	`sequenceAttachment` (TBC).
`protected IntegerType`	`subunit` Index of linear sequences of nucleic acids in order of decreasing length.
`protected List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent>`	`sugar` 5.3.6.8.1 Sugar ID (Mandatory).
`protected CodeableConcept`	`threePrime` The nucleotide present at the 3’ terminal shall be specified based on a controlled vocabulary.

Fields inherited from class org.hl7.fhir.r4.model.BackboneElement
modifierExtension

Fields inherited from class org.hl7.fhir.r4.model.Element
extension, id

Constructor Summary

Constructors
Constructor and Description

SubstanceNucleicAcidSubunitComponent()
Constructor

Constructors
Constructor and Description
`SubstanceNucleicAcidSubunitComponent()` Constructor

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`Base`	`addChild(String name)`
`SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent`	`addLinkage()`
`SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent`	`addLinkage(SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent t)`
`SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent`	`addSugar()`
`SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent`	`addSugar(SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent t)`
`SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent`	`copy()`
`void`	`copyValues(SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent dst)`
`boolean`	`equalsDeep(Base other_)`
`boolean`	`equalsShallow(Base other_)`
`String`	`fhirType()`
`CodeableConcept`	`getFivePrime()`
`int`	`getLength()`
`IntegerType`	`getLengthElement()`
`List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent>`	`getLinkage()`
`SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent`	`getLinkageFirstRep()`
`Property`	`getNamedProperty(int _hash, String _name, boolean _checkValid)`
`Base[]`	`getProperty(int hash, String name, boolean checkValid)`
`String`	`getSequence()`
`Attachment`	`getSequenceAttachment()`
`StringType`	`getSequenceElement()`
`int`	`getSubunit()`
`IntegerType`	`getSubunitElement()`
`List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent>`	`getSugar()`
`SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent`	`getSugarFirstRep()`
`CodeableConcept`	`getThreePrime()`
`String[]`	`getTypesForProperty(int hash, String name)`
`boolean`	`hasFivePrime()`
`boolean`	`hasLength()`
`boolean`	`hasLengthElement()`
`boolean`	`hasLinkage()`
`boolean`	`hasSequence()`
`boolean`	`hasSequenceAttachment()`
`boolean`	`hasSequenceElement()`
`boolean`	`hasSubunit()`
`boolean`	`hasSubunitElement()`
`boolean`	`hasSugar()`
`boolean`	`hasThreePrime()`
`boolean`	`isEmpty()`
`protected void`	`listChildren(List<Property> children)`
`Base`	`makeProperty(int hash, String name)`
`SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent`	`setFivePrime(CodeableConcept value)`
`SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent`	`setLength(int value)`
`SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent`	`setLengthElement(IntegerType value)`
`SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent`	`setLinkage(List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent> theLinkage)`
`Base`	`setProperty(int hash, String name, Base value)`
`Base`	`setProperty(String name, Base value)`
`SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent`	`setSequence(String value)`
`SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent`	`setSequenceAttachment(Attachment value)`
`SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent`	`setSequenceElement(StringType value)`
`SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent`	`setSubunit(int value)`
`SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent`	`setSubunitElement(IntegerType value)`
`SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent`	`setSugar(List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent> theSugar)`
`SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent`	`setThreePrime(CodeableConcept value)`

Methods inherited from class org.hl7.fhir.r4.model.BackboneElement
addModifierExtension, addModifierExtension, checkNoModifiers, copyValues, getModifierExtension, getModifierExtensionFirstRep, hasModifierExtension, setModifierExtension

Methods inherited from class org.hl7.fhir.r4.model.Element
addExtension, addExtension, addExtension, copyValues, getExtension, getExtensionByUrl, getExtensionFirstRep, getExtensionsByUrl, getExtensionString, getId, getIdBase, getIdElement, hasExtension, hasExtension, hasId, hasIdElement, isDisallowExtensions, noExtensions, removeExtension, setDisallowExtensions, setExtension, setId, setIdBase, setIdElement

Methods inherited from class org.hl7.fhir.r4.model.Base
castToAddress, castToAnnotation, castToAttachment, castToBase64Binary, castToBoolean, castToCanonical, castToCode, castToCodeableConcept, castToCoding, castToContactDetail, castToContactPoint, castToContributor, castToDataRequirement, castToDate, castToDateTime, castToDecimal, castToDosage, castToDuration, castToElementDefinition, castToExpression, castToExtension, castToHumanName, castToId, castToIdentifier, castToInstant, castToInteger, castToMarkdown, castToMarketingStatus, castToMeta, castToMoney, castToNarrative, castToOid, castToParameterDefinition, castToPeriod, castToPopulation, castToPositiveInt, castToProdCharacteristic, castToProductShelfLife, castToQuantity, castToRange, castToRatio, castToReference, castToRelatedArtifact, castToResource, castToSampledData, castToSignature, castToSimpleQuantity, castToString, castToSubstanceAmount, castToTime, castToTiming, castToTriggerDefinition, castToType, castToUnsignedInt, castToUri, castToUrl, castToUsageContext, castToXhtml, castToXhtmlString, children, clearUserData, compareDeep, compareDeep, compareDeep, compareDeep, compareValues, compareValues, dateTimeValue, equals, getChildByName, getFormatCommentsPost, getFormatCommentsPre, getNamedProperty, getUserData, getUserInt, getUserString, hasFormatComment, hasPrimitiveValue, hasType, hasUserData, isBooleanPrimitive, isDateTime, isMetadataBased, isPrimitive, isResource, listChildrenByName, listChildrenByName, primitiveValue, setUserData, setUserDataINN

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasExtensions
addExtension, getExtension, hasExtension

Methods inherited from interface org.hl7.fhir.instance.model.api.IBase
getFormatCommentsPost, getFormatCommentsPre, getUserData, hasFormatComment, setUserData

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions
addModifierExtension, getModifierExtension, hasModifierExtension

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseElement
getUserData, setUserData

- Field Detail
  - subunit
```
protected IntegerType subunit
```
    Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.
  - sequence
```
protected StringType sequence
```
    Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured.
  - length
```
protected IntegerType length
```
    The length of the sequence shall be captured.
  - sequenceAttachment
```
protected Attachment sequenceAttachment
```
    (TBC).
  - fivePrime
```
protected CodeableConcept fivePrime
```
    The nucleotide present at the 5’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the first position in the sequence. A separate representation would be redundant.
  - threePrime
```
protected CodeableConcept threePrime
```
    The nucleotide present at the 3’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the last position in the sequence. A separate representation would be redundant.
  - linkage
```
protected List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent> linkage
```
    The linkages between sugar residues will also be captured.
  - sugar
```
protected List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent> sugar
```
    5.3.6.8.1 Sugar ID (Mandatory).
- Constructor Detail
  - SubstanceNucleicAcidSubunitComponent
```
public SubstanceNucleicAcidSubunitComponent()
```
    Constructor
- Method Detail
  - getSubunitElement
```
public IntegerType getSubunitElement()
```
    Returns:
    
    subunit (Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.). This is the underlying object with id, value and extensions. The accessor "getSubunit" gives direct access to the value
  - hasSubunitElement
```
public boolean hasSubunitElement()
```
  - hasSubunit
```
public boolean hasSubunit()
```
  - setSubunitElement
```
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setSubunitElement(IntegerType value)
```
    Parameters:
    
    value - subunit (Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.). This is the underlying object with id, value and extensions. The accessor "getSubunit" gives direct access to the value
  - getSubunit
```
public int getSubunit()
```
    Returns:
    
    Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.
  - setSubunit
```
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setSubunit(int value)
```
    Parameters:
    
    value - Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.
  - getSequenceElement
```
public StringType getSequenceElement()
```
    Returns:
    
    sequence (Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured.). This is the underlying object with id, value and extensions. The accessor "getSequence" gives direct access to the value
  - hasSequenceElement
```
public boolean hasSequenceElement()
```
  - hasSequence
```
public boolean hasSequence()
```
  - setSequenceElement
```
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setSequenceElement(StringType value)
```
    Parameters:
    
    value - sequence (Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured.). This is the underlying object with id, value and extensions. The accessor "getSequence" gives direct access to the value
  - getSequence
```
public String getSequence()
```
    Returns:
    
    Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured.
  - setSequence
```
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setSequence(String value)
```
    Parameters:
    
    value - Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured.
  - getLengthElement
```
public IntegerType getLengthElement()
```
    Returns:
    
    length (The length of the sequence shall be captured.). This is the underlying object with id, value and extensions. The accessor "getLength" gives direct access to the value
  - hasLengthElement
```
public boolean hasLengthElement()
```
  - hasLength
```
public boolean hasLength()
```
  - setLengthElement
```
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setLengthElement(IntegerType value)
```
    Parameters:
    
    value - length (The length of the sequence shall be captured.). This is the underlying object with id, value and extensions. The accessor "getLength" gives direct access to the value
  - getLength
```
public int getLength()
```
    Returns:
    
    The length of the sequence shall be captured.
  - setLength
```
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setLength(int value)
```
    Parameters:
    
    value - The length of the sequence shall be captured.
  - getSequenceAttachment
```
public Attachment getSequenceAttachment()
```
    Returns:
    
    sequenceAttachment ((TBC).)
  - hasSequenceAttachment
```
public boolean hasSequenceAttachment()
```
  - setSequenceAttachment
```
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setSequenceAttachment(Attachment value)
```
    Parameters:
    
    value - sequenceAttachment ((TBC).)
  - getFivePrime
```
public CodeableConcept getFivePrime()
```
    Returns:
    
    fivePrime (The nucleotide present at the 5’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the first position in the sequence. A separate representation would be redundant.)
  - hasFivePrime
```
public boolean hasFivePrime()
```
  - setFivePrime
```
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setFivePrime(CodeableConcept value)
```
    Parameters:
    
    value - fivePrime (The nucleotide present at the 5’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the first position in the sequence. A separate representation would be redundant.)
  - getThreePrime
```
public CodeableConcept getThreePrime()
```
    Returns:
    
    threePrime (The nucleotide present at the 3’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the last position in the sequence. A separate representation would be redundant.)
  - hasThreePrime
```
public boolean hasThreePrime()
```
  - setThreePrime
```
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setThreePrime(CodeableConcept value)
```
    Parameters:
    
    value - threePrime (The nucleotide present at the 3’ terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5’ prime nucleotide is the letter at the last position in the sequence. A separate representation would be redundant.)
  - getLinkage
```
public List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent> getLinkage()
```
    Returns:
    
    linkage (The linkages between sugar residues will also be captured.)
  - setLinkage
```
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setLinkage(List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent> theLinkage)
```
    Returns:
    
    Returns a reference to this for easy method chaining
  - hasLinkage
```
public boolean hasLinkage()
```
  - addLinkage
```
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent addLinkage()
```
  - addLinkage
```
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent addLinkage(SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent t)
```
  - getLinkageFirstRep
```
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitLinkageComponent getLinkageFirstRep()
```
    Returns:
    
    The first repetition of repeating field linkage, creating it if it does not already exist
  - getSugar
```
public List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent> getSugar()
```
    Returns:
    
    sugar (5.3.6.8.1 Sugar ID (Mandatory).)
  - setSugar
```
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent setSugar(List<SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent> theSugar)
```
    Returns:
    
    Returns a reference to this for easy method chaining
  - hasSugar
```
public boolean hasSugar()
```
  - addSugar
```
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent addSugar()
```
  - addSugar
```
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent addSugar(SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent t)
```
  - getSugarFirstRep
```
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitSugarComponent getSugarFirstRep()
```
    Returns:
    
    The first repetition of repeating field sugar, creating it if it does not already exist
  - listChildren
```
protected void listChildren(List<Property> children)
```
    Overrides:
    
    listChildren in class BackboneElement
  - getNamedProperty
```
public Property getNamedProperty(int _hash,
                                 String _name,
                                 boolean _checkValid)
                          throws org.hl7.fhir.exceptions.FHIRException
```
    Overrides:
    
    getNamedProperty in class BackboneElement
    
    Throws:
    
    org.hl7.fhir.exceptions.FHIRException
  - getProperty
```
public Base[] getProperty(int hash,
                          String name,
                          boolean checkValid)
                   throws org.hl7.fhir.exceptions.FHIRException
```
    Overrides:
    
    getProperty in class BackboneElement
    
    Throws:
    
    org.hl7.fhir.exceptions.FHIRException
  - setProperty
```
public Base setProperty(int hash,
                        String name,
                        Base value)
                 throws org.hl7.fhir.exceptions.FHIRException
```
    Overrides:
    
    setProperty in class BackboneElement
    
    Throws:
    
    org.hl7.fhir.exceptions.FHIRException
  - setProperty
```
public Base setProperty(String name,
                        Base value)
                 throws org.hl7.fhir.exceptions.FHIRException
```
    Overrides:
    
    setProperty in class BackboneElement
    
    Throws:
    
    org.hl7.fhir.exceptions.FHIRException
  - makeProperty
```
public Base makeProperty(int hash,
                         String name)
                  throws org.hl7.fhir.exceptions.FHIRException
```
    Overrides:
    
    makeProperty in class BackboneElement
    
    Throws:
    
    org.hl7.fhir.exceptions.FHIRException
  - getTypesForProperty
```
public String[] getTypesForProperty(int hash,
                                    String name)
                             throws org.hl7.fhir.exceptions.FHIRException
```
    Overrides:
    
    getTypesForProperty in class BackboneElement
    
    Throws:
    
    org.hl7.fhir.exceptions.FHIRException
  - addChild
```
public Base addChild(String name)
              throws org.hl7.fhir.exceptions.FHIRException
```
    Overrides:
    
    addChild in class BackboneElement
    
    Throws:
    
    org.hl7.fhir.exceptions.FHIRException
  - copy
```
public SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent copy()
```
    Specified by:
    
    copy in class BackboneElement
  - copyValues
```
public void copyValues(SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent dst)
```
  - equalsDeep
```
public boolean equalsDeep(Base other_)
```
    Overrides:
    
    equalsDeep in class BackboneElement
  - equalsShallow
```
public boolean equalsShallow(Base other_)
```
    Overrides:
    
    equalsShallow in class BackboneElement
  - isEmpty
```
public boolean isEmpty()
```
    Specified by:
    
    isEmpty in interface org.hl7.fhir.instance.model.api.IBase
    
    Overrides:
    
    isEmpty in class BackboneElement
  - fhirType
```
public String fhirType()
```
    Specified by:
    
    fhirType in interface org.hl7.fhir.instance.model.api.IBase
    
    Overrides:
    
    fhirType in class BackboneElement

Class SubstanceNucleicAcid.SubstanceNucleicAcidSubunitComponent

Field Summary

Fields inherited from class org.hl7.fhir.r4.model.BackboneElement

Fields inherited from class org.hl7.fhir.r4.model.Element

Constructor Summary

Method Summary

Methods inherited from class org.hl7.fhir.r4.model.BackboneElement

Methods inherited from class org.hl7.fhir.r4.model.Element

Methods inherited from class org.hl7.fhir.r4.model.Base

Methods inherited from class java.lang.Object

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasExtensions

Methods inherited from interface org.hl7.fhir.instance.model.api.IBase

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseElement

Field Detail

subunit

sequence

length

sequenceAttachment

fivePrime

threePrime

linkage

sugar

Constructor Detail

SubstanceNucleicAcidSubunitComponent

Method Detail

getSubunitElement

hasSubunitElement

hasSubunit

setSubunitElement

getSubunit

setSubunit

getSequenceElement

hasSequenceElement

hasSequence

setSequenceElement

getSequence

setSequence

getLengthElement

hasLengthElement

hasLength

setLengthElement

getLength

setLength

getSequenceAttachment

hasSequenceAttachment

setSequenceAttachment

getFivePrime

hasFivePrime

setFivePrime

getThreePrime

hasThreePrime

setThreePrime

getLinkage

setLinkage

hasLinkage

addLinkage

addLinkage

getLinkageFirstRep

getSugar

setSugar

hasSugar

addSugar

addSugar

getSugarFirstRep

listChildren

getNamedProperty

getProperty

setProperty

setProperty

makeProperty

getTypesForProperty

addChild

copy

copyValues

equalsDeep

equalsShallow

isEmpty

fhirType