001package org.hl7.fhir.convertors.loaders.loaderR5; 002 003/* 004 Copyright (c) 2011+, HL7, Inc. 005 All rights reserved. 006 007 Redistribution and use in source and binary forms, with or without modification, 008 are permitted provided that the following conditions are met: 009 010 * Redistributions of source code must retain the above copyright notice, this 011 list of conditions and the following disclaimer. 012 * Redistributions in binary form must reproduce the above copyright notice, 013 this list of conditions and the following disclaimer in the documentation 014 and/or other materials provided with the distribution. 015 * Neither the name of HL7 nor the names of its contributors may be used to 016 endorse or promote products derived from this software without specific 017 prior written permission. 018 019 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND 020 ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED 021 WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. 022 IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, 023 INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT 024 NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR 025 PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, 026 WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 027 ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 028 POSSIBILITY OF SUCH DAMAGE. 029 030 */ 031 032 033import org.hl7.fhir.convertors.advisors.impl.BaseAdvisor_10_50; 034import org.hl7.fhir.convertors.factory.VersionConvertorFactory_10_50; 035import org.hl7.fhir.dstu2.formats.JsonParser; 036import org.hl7.fhir.dstu2.formats.XmlParser; 037import org.hl7.fhir.dstu2.model.Resource; 038import org.hl7.fhir.exceptions.FHIRException; 039import org.hl7.fhir.r5.context.IWorkerContext.IContextResourceLoader; 040import org.hl7.fhir.r5.model.*; 041import org.hl7.fhir.r5.model.Bundle.BundleEntryComponent; 042import org.hl7.fhir.r5.model.Bundle.BundleType; 043import org.hl7.fhir.r5.model.ElementDefinition.TypeRefComponent; 044import org.hl7.fhir.r5.model.StructureDefinition.StructureDefinitionKind; 045 046import java.io.IOException; 047import java.io.InputStream; 048import java.util.ArrayList; 049import java.util.List; 050import java.util.UUID; 051 052public class R2ToR5Loader extends BaseLoaderR5 implements IContextResourceLoader { 053 054 private final BaseAdvisor_10_50 advisor = new BaseAdvisor_10_50(); 055 056 public R2ToR5Loader(String[] types, ILoaderKnowledgeProviderR5 lkp) { 057 super(types, lkp); 058 } 059 060 @Override 061 public Bundle loadBundle(InputStream stream, boolean isJson) throws FHIRException, IOException { 062 Resource r2 = null; 063 if (isJson) 064 r2 = new JsonParser().parse(stream); 065 else 066 r2 = new XmlParser().parse(stream); 067 org.hl7.fhir.r5.model.Resource r5 = VersionConvertorFactory_10_50.convertResource(r2, advisor); 068 Bundle b; 069 if (r5 instanceof Bundle) { 070 b = (Bundle) r5; 071 } else { 072 b = new Bundle(); 073 b.setId(UUID.randomUUID().toString().toLowerCase()); 074 b.setType(BundleType.COLLECTION); 075 b.addEntry().setResource(r5).setFullUrl(r5 instanceof CanonicalResource ? ((CanonicalResource) r5).getUrl() : null); 076 } 077 // Add any code systems defined as part of processing value sets to the end of the converted Bundle 078 for (CodeSystem cs : advisor.getCslist()) { 079 BundleEntryComponent be = b.addEntry(); 080 be.setFullUrl(cs.getUrl()); 081 be.setResource(cs); 082 } 083 084 advisor.getCslist().clear(); 085 086 if (killPrimitives) { 087 List<BundleEntryComponent> remove = new ArrayList<BundleEntryComponent>(); 088 for (BundleEntryComponent be : b.getEntry()) { 089 if (be.hasResource() && be.getResource() instanceof StructureDefinition) { 090 StructureDefinition sd = (StructureDefinition) be.getResource(); 091 if (sd.getKind() == StructureDefinitionKind.PRIMITIVETYPE) 092 remove.add(be); 093 } 094 } 095 b.getEntry().removeAll(remove); 096 } 097 if (patchUrls) { 098 for (BundleEntryComponent be : b.getEntry()) { 099 if (be.hasResource() && be.getResource() instanceof StructureDefinition) { 100 StructureDefinition sd = (StructureDefinition) be.getResource(); 101 sd.setUrl(sd.getUrl().replace(URL_BASE, URL_DSTU2)); 102 sd.addExtension().setUrl(URL_ELEMENT_DEF_NAMESPACE).setValue(new UriType(URL_BASE)); 103 } 104 } 105 } 106 return b; 107 } 108 109 110 @Override 111 public org.hl7.fhir.r5.model.Resource loadResource(InputStream stream, boolean isJson) throws FHIRException, IOException { 112 Resource r2 = null; 113 if (isJson) 114 r2 = new JsonParser().parse(stream); 115 else 116 r2 = new XmlParser().parse(stream); 117 org.hl7.fhir.r5.model.Resource r5 = VersionConvertorFactory_10_50.convertResource(r2, advisor); 118 setPath(r5); 119 if (!advisor.getCslist().isEmpty()) { 120 throw new FHIRException("Error: Cannot have included code systems"); 121 } 122 if (killPrimitives) { 123 throw new FHIRException("Cannot kill primitives when using deferred loading"); 124 } 125 if (patchUrls) { 126 if (r5 instanceof StructureDefinition) { 127 StructureDefinition sd = (StructureDefinition) r5; 128 sd.setUrl(sd.getUrl().replace(URL_BASE, URL_R4)); 129 sd.addExtension().setUrl(URL_ELEMENT_DEF_NAMESPACE).setValue(new UriType(URL_BASE)); 130 for (ElementDefinition ed : sd.getSnapshot().getElement()) 131 patchUrl(ed); 132 for (ElementDefinition ed : sd.getDifferential().getElement()) 133 patchUrl(ed); 134 } 135 } 136 return r5; 137 } 138 139 private void patchUrl(ElementDefinition ed) { 140 for (TypeRefComponent tr : ed.getType()) { 141 for (CanonicalType s : tr.getTargetProfile()) { 142 s.setValue(s.getValue().replace(URL_BASE, URL_DSTU2)); 143 } 144 for (CanonicalType s : tr.getProfile()) { 145 s.setValue(s.getValue().replace(URL_BASE, URL_DSTU2)); 146 } 147 } 148 } 149}