001package org.hl7.fhir.convertors.loaders.loaderR5;
002
003/*
004  Copyright (c) 2011+, HL7, Inc.
005  All rights reserved.
006  
007  Redistribution and use in source and binary forms, with or without modification, 
008  are permitted provided that the following conditions are met:
009    
010   * Redistributions of source code must retain the above copyright notice, this 
011     list of conditions and the following disclaimer.
012   * Redistributions in binary form must reproduce the above copyright notice, 
013     this list of conditions and the following disclaimer in the documentation 
014     and/or other materials provided with the distribution.
015   * Neither the name of HL7 nor the names of its contributors may be used to 
016     endorse or promote products derived from this software without specific 
017     prior written permission.
018  
019  THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND 
020  ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED 
021  WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. 
022  IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, 
023  INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT 
024  NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR 
025  PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, 
026  WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 
027  ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
028  POSSIBILITY OF SUCH DAMAGE.
029  
030 */
031
032
033import org.hl7.fhir.convertors.advisors.impl.BaseAdvisor_10_50;
034import org.hl7.fhir.convertors.factory.VersionConvertorFactory_10_50;
035import org.hl7.fhir.dstu2.formats.JsonParser;
036import org.hl7.fhir.dstu2.formats.XmlParser;
037import org.hl7.fhir.dstu2.model.Resource;
038import org.hl7.fhir.exceptions.FHIRException;
039import org.hl7.fhir.r5.context.IWorkerContext.IContextResourceLoader;
040import org.hl7.fhir.r5.model.*;
041import org.hl7.fhir.r5.model.Bundle.BundleEntryComponent;
042import org.hl7.fhir.r5.model.Bundle.BundleType;
043import org.hl7.fhir.r5.model.ElementDefinition.TypeRefComponent;
044import org.hl7.fhir.r5.model.StructureDefinition.StructureDefinitionKind;
045
046import java.io.IOException;
047import java.io.InputStream;
048import java.util.ArrayList;
049import java.util.List;
050import java.util.UUID;
051
052public class R2ToR5Loader extends BaseLoaderR5 implements IContextResourceLoader {
053
054  private final BaseAdvisor_10_50 advisor = new BaseAdvisor_10_50();
055
056  public R2ToR5Loader(String[] types, ILoaderKnowledgeProviderR5 lkp) {
057    super(types, lkp);
058  }
059
060  @Override
061  public Bundle loadBundle(InputStream stream, boolean isJson) throws FHIRException, IOException {
062    Resource r2 = null;
063    if (isJson)
064      r2 = new JsonParser().parse(stream);
065    else
066      r2 = new XmlParser().parse(stream);
067    org.hl7.fhir.r5.model.Resource r5 = VersionConvertorFactory_10_50.convertResource(r2, advisor);
068    Bundle b;
069    if (r5 instanceof Bundle) {
070      b = (Bundle) r5;
071    } else {
072      b = new Bundle();
073      b.setId(UUID.randomUUID().toString().toLowerCase());
074      b.setType(BundleType.COLLECTION);
075      b.addEntry().setResource(r5).setFullUrl(r5 instanceof CanonicalResource ? ((CanonicalResource) r5).getUrl() : null);
076    }
077    // Add any code systems defined as part of processing value sets to the end of the converted Bundle
078    for (CodeSystem cs : advisor.getCslist()) {
079      BundleEntryComponent be = b.addEntry();
080      be.setFullUrl(cs.getUrl());
081      be.setResource(cs);
082    }
083
084    advisor.getCslist().clear();
085
086    if (killPrimitives) {
087      List<BundleEntryComponent> remove = new ArrayList<BundleEntryComponent>();
088      for (BundleEntryComponent be : b.getEntry()) {
089        if (be.hasResource() && be.getResource() instanceof StructureDefinition) {
090          StructureDefinition sd = (StructureDefinition) be.getResource();
091          if (sd.getKind() == StructureDefinitionKind.PRIMITIVETYPE)
092            remove.add(be);
093        }
094      }
095      b.getEntry().removeAll(remove);
096    }
097    if (patchUrls) {
098      for (BundleEntryComponent be : b.getEntry()) {
099        if (be.hasResource() && be.getResource() instanceof StructureDefinition) {
100          StructureDefinition sd = (StructureDefinition) be.getResource();
101          sd.setUrl(sd.getUrl().replace(URL_BASE, URL_DSTU2));
102          sd.addExtension().setUrl(URL_ELEMENT_DEF_NAMESPACE).setValue(new UriType(URL_BASE));
103        }
104      }
105    }
106    return b;
107  }
108
109
110  @Override
111  public org.hl7.fhir.r5.model.Resource loadResource(InputStream stream, boolean isJson) throws FHIRException, IOException {
112    Resource r2 = null;
113    if (isJson)
114      r2 = new JsonParser().parse(stream);
115    else
116      r2 = new XmlParser().parse(stream);
117    org.hl7.fhir.r5.model.Resource r5 = VersionConvertorFactory_10_50.convertResource(r2, advisor);
118    setPath(r5);
119    if (!advisor.getCslist().isEmpty()) {
120      throw new FHIRException("Error: Cannot have included code systems");
121    }
122    if (killPrimitives) {
123      throw new FHIRException("Cannot kill primitives when using deferred loading");
124    }
125    if (patchUrls) {
126      if (r5 instanceof StructureDefinition) {
127        StructureDefinition sd = (StructureDefinition) r5;
128        sd.setUrl(sd.getUrl().replace(URL_BASE, URL_R4));
129        sd.addExtension().setUrl(URL_ELEMENT_DEF_NAMESPACE).setValue(new UriType(URL_BASE));
130        for (ElementDefinition ed : sd.getSnapshot().getElement())
131          patchUrl(ed);
132        for (ElementDefinition ed : sd.getDifferential().getElement())
133          patchUrl(ed);
134      }
135    }
136    return r5;
137  }
138
139  private void patchUrl(ElementDefinition ed) {
140    for (TypeRefComponent tr : ed.getType()) {
141      for (CanonicalType s : tr.getTargetProfile()) {
142        s.setValue(s.getValue().replace(URL_BASE, URL_DSTU2));
143      }
144      for (CanonicalType s : tr.getProfile()) {
145        s.setValue(s.getValue().replace(URL_BASE, URL_DSTU2));
146      }
147    }
148  }
149}