java.lang.Object
- org.hl7.fhir.dstu2016may.model.Base
- - org.hl7.fhir.dstu2016may.model.Element
  - - org.hl7.fhir.dstu2016may.model.BackboneElement
    - - org.hl7.fhir.dstu2016may.model.Sequence.SequenceReferenceSeqComponent

All Implemented Interfaces:

ca.uhn.fhir.model.api.IElement, Serializable, org.hl7.fhir.instance.model.api.IBase, org.hl7.fhir.instance.model.api.IBaseBackboneElement, org.hl7.fhir.instance.model.api.IBaseElement, org.hl7.fhir.instance.model.api.IBaseHasExtensions, org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions

Enclosing class:

Sequence
```
public static class Sequence.SequenceReferenceSeqComponent
extends BackboneElement
implements org.hl7.fhir.instance.model.api.IBaseBackboneElement
```
See Also:

Serialized Form

Field Summary

Fields
Modifier and Type	Field	Description
`protected CodeableConcept`	`chromosome`	The chromosome containing the genetic finding.
`protected StringType`	`genomeBuild`	The Genome Build used for reference, following GRCh build versions e.g.
`protected CodeableConcept`	`referenceSeqId`	Reference identifier of reference sequence submitted to NCBI.
`protected Reference`	`referenceSeqPointer`	A Pointer to another Sequence entity as refence sequence.
`protected Sequence`	`referenceSeqPointerTarget`	The actual object that is the target of the reference (A Pointer to another Sequence entity as refence sequence.)
`protected StringType`	`referenceSeqString`	A Reference Sequence string.
`protected IntegerType`	`windowEnd`	0-based end position (exclusive) of the window on the reference sequence.
`protected IntegerType`	`windowStart`	0-based start position (inclusive) of the window on the reference sequence.

Fields inherited from class org.hl7.fhir.dstu2016may.model.BackboneElement
modifierExtension

Fields inherited from class org.hl7.fhir.dstu2016may.model.Element
extension, id

Constructor Summary

Constructors
Constructor	Description
`SequenceReferenceSeqComponent()`	Constructor
`SequenceReferenceSeqComponent(CodeableConcept referenceSeqId, IntegerType windowStart, IntegerType windowEnd)`	Constructor

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`Base`	`addChild(String name)`
`Sequence.SequenceReferenceSeqComponent`	`copy()`
`boolean`	`equalsDeep(Base other)`
`boolean`	`equalsShallow(Base other)`
`String`	`fhirType()`
`CodeableConcept`	`getChromosome()`
`String`	`getGenomeBuild()`
`StringType`	`getGenomeBuildElement()`
`Base[]`	`getProperty(int hash, String name, boolean checkValid)`
`CodeableConcept`	`getReferenceSeqId()`
`Reference`	`getReferenceSeqPointer()`
`Sequence`	`getReferenceSeqPointerTarget()`
`String`	`getReferenceSeqString()`
`StringType`	`getReferenceSeqStringElement()`
`int`	`getWindowEnd()`
`IntegerType`	`getWindowEndElement()`
`int`	`getWindowStart()`
`IntegerType`	`getWindowStartElement()`
`boolean`	`hasChromosome()`
`boolean`	`hasGenomeBuild()`
`boolean`	`hasGenomeBuildElement()`
`boolean`	`hasReferenceSeqId()`
`boolean`	`hasReferenceSeqPointer()`
`boolean`	`hasReferenceSeqString()`
`boolean`	`hasReferenceSeqStringElement()`
`boolean`	`hasWindowEnd()`
`boolean`	`hasWindowEndElement()`
`boolean`	`hasWindowStart()`
`boolean`	`hasWindowStartElement()`
`boolean`	`isEmpty()`
`protected void`	`listChildren(List<Property> childrenList)`
`Base`	`makeProperty(int hash, String name)`	make an instance of a property.
`Sequence.SequenceReferenceSeqComponent`	`setChromosome(CodeableConcept value)`
`Sequence.SequenceReferenceSeqComponent`	`setGenomeBuild(String value)`
`Sequence.SequenceReferenceSeqComponent`	`setGenomeBuildElement(StringType value)`
`void`	`setProperty(int hash, String name, Base value)`
`void`	`setProperty(String name, Base value)`
`Sequence.SequenceReferenceSeqComponent`	`setReferenceSeqId(CodeableConcept value)`
`Sequence.SequenceReferenceSeqComponent`	`setReferenceSeqPointer(Reference value)`
`Sequence.SequenceReferenceSeqComponent`	`setReferenceSeqPointerTarget(Sequence value)`
`Sequence.SequenceReferenceSeqComponent`	`setReferenceSeqString(String value)`
`Sequence.SequenceReferenceSeqComponent`	`setReferenceSeqStringElement(StringType value)`
`Sequence.SequenceReferenceSeqComponent`	`setWindowEnd(int value)`
`Sequence.SequenceReferenceSeqComponent`	`setWindowEndElement(IntegerType value)`
`Sequence.SequenceReferenceSeqComponent`	`setWindowStart(int value)`
`Sequence.SequenceReferenceSeqComponent`	`setWindowStartElement(IntegerType value)`

Methods inherited from class org.hl7.fhir.dstu2016may.model.BackboneElement
addModifierExtension, addModifierExtension, copyValues, getModifierExtension, hasModifierExtension

Methods inherited from class org.hl7.fhir.dstu2016may.model.Element
addExtension, addExtension, copyValues, getExtension, getExtensionsByUrl, getExtensionString, getId, getIdElement, hasExtension, hasExtension, hasId, hasIdElement, setId, setIdElement

Methods inherited from class org.hl7.fhir.dstu2016may.model.Base
castToActionDefinition, castToAddress, castToAnnotation, castToAttachment, castToBase64Binary, castToBoolean, castToCode, castToCodeableConcept, castToCoding, castToContactPoint, castToDataRequirement, castToDate, castToDateTime, castToDecimal, castToDuration, castToElementDefinition, castToExtension, castToHumanName, castToId, castToIdentifier, castToInstant, castToInteger, castToMarkdown, castToMeta, castToModuleMetadata, castToMoney, castToNarrative, castToOid, castToParameterDefinition, castToPeriod, castToPositiveInt, castToQuantity, castToRange, castToRatio, castToReference, castToResource, castToSampledData, castToSignature, castToSimpleQuantity, castToString, castToTime, castToTiming, castToTriggerDefinition, castToUnsignedInt, castToUri, children, compareDeep, compareDeep, compareDeep, compareValues, compareValues, equals, getChildByName, getFormatCommentsPost, getFormatCommentsPre, getUserData, getUserInt, getUserString, hasFormatComment, hasPrimitiveValue, hasType, hasUserData, isMetadataBased, isPrimitive, listChildrenByName, listChildrenByName, primitiveValue, setUserData, setUserDataINN

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hl7.fhir.instance.model.api.IBase
getFormatCommentsPost, getFormatCommentsPre, getUserData, hasFormatComment, setUserData

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseElement
getUserData, setUserData

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasExtensions
addExtension, getExtension, hasExtension

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions
addModifierExtension, getModifierExtension, hasModifierExtension

- Field Detail
  - chromosome
```
protected CodeableConcept chromosome
```
    The chromosome containing the genetic finding. The value set will be 1-22, X, Y when the species is human without chromosome abnormality. Otherwise, NCBI-Gene code system should be used.
  - genomeBuild
```
protected StringType genomeBuild
```
    The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'. Version number must be included if a versioned release of a primary build was used.
  - referenceSeqId
```
protected CodeableConcept referenceSeqId
```
    Reference identifier of reference sequence submitted to NCBI. It must match the type in the Sequence.type field. For example, the prefix, “NG_” identifies reference sequence for genes, “NM_” for messenger RNA transcripts, and “NP_” for amino acid sequences.
  - referenceSeqPointer
```
protected Reference referenceSeqPointer
```
    A Pointer to another Sequence entity as refence sequence.
  - referenceSeqPointerTarget
```
protected Sequence referenceSeqPointerTarget
```
    The actual object that is the target of the reference (A Pointer to another Sequence entity as refence sequence.)
  - referenceSeqString
```
protected StringType referenceSeqString
```
    A Reference Sequence string.
  - windowStart
```
protected IntegerType windowStart
```
    0-based start position (inclusive) of the window on the reference sequence.
  - windowEnd
```
protected IntegerType windowEnd
```
    0-based end position (exclusive) of the window on the reference sequence.
- Constructor Detail
  - SequenceReferenceSeqComponent
```
public SequenceReferenceSeqComponent()
```
    Constructor
  - SequenceReferenceSeqComponent
```
public SequenceReferenceSeqComponent(CodeableConcept referenceSeqId,
                                     IntegerType windowStart,
                                     IntegerType windowEnd)
```
    Constructor
- Method Detail
  - getChromosome
```
public CodeableConcept getChromosome()
```
    Returns:
    
    chromosome (The chromosome containing the genetic finding. The value set will be 1-22, X, Y when the species is human without chromosome abnormality. Otherwise, NCBI-Gene code system should be used.)
  - hasChromosome
```
public boolean hasChromosome()
```
  - setChromosome
```
public Sequence.SequenceReferenceSeqComponent setChromosome(CodeableConcept value)
```
    Parameters:
    
    value - chromosome (The chromosome containing the genetic finding. The value set will be 1-22, X, Y when the species is human without chromosome abnormality. Otherwise, NCBI-Gene code system should be used.)
  - getGenomeBuildElement
```
public StringType getGenomeBuildElement()
```
    Returns:
    
    genomeBuild (The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'. Version number must be included if a versioned release of a primary build was used.). This is the underlying object with id, value and extensions. The accessor "getGenomeBuild" gives direct access to the value
  - hasGenomeBuildElement
```
public boolean hasGenomeBuildElement()
```
  - hasGenomeBuild
```
public boolean hasGenomeBuild()
```
  - setGenomeBuildElement
```
public Sequence.SequenceReferenceSeqComponent setGenomeBuildElement(StringType value)
```
    Parameters:
    
    value - genomeBuild (The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'. Version number must be included if a versioned release of a primary build was used.). This is the underlying object with id, value and extensions. The accessor "getGenomeBuild" gives direct access to the value
  - getGenomeBuild
```
public String getGenomeBuild()
```
    Returns:
    
    The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'. Version number must be included if a versioned release of a primary build was used.
  - setGenomeBuild
```
public Sequence.SequenceReferenceSeqComponent setGenomeBuild(String value)
```
    Parameters:
    
    value - The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'. Version number must be included if a versioned release of a primary build was used.
  - getReferenceSeqId
```
public CodeableConcept getReferenceSeqId()
```
    Returns:
    
    referenceSeqId (Reference identifier of reference sequence submitted to NCBI. It must match the type in the Sequence.type field. For example, the prefix, “NG_” identifies reference sequence for genes, “NM_” for messenger RNA transcripts, and “NP_” for amino acid sequences.)
  - hasReferenceSeqId
```
public boolean hasReferenceSeqId()
```
  - setReferenceSeqId
```
public Sequence.SequenceReferenceSeqComponent setReferenceSeqId(CodeableConcept value)
```
    Parameters:
    
    value - referenceSeqId (Reference identifier of reference sequence submitted to NCBI. It must match the type in the Sequence.type field. For example, the prefix, “NG_” identifies reference sequence for genes, “NM_” for messenger RNA transcripts, and “NP_” for amino acid sequences.)
  - getReferenceSeqPointer
```
public Reference getReferenceSeqPointer()
```
    Returns:
    
    referenceSeqPointer (A Pointer to another Sequence entity as refence sequence.)
  - hasReferenceSeqPointer
```
public boolean hasReferenceSeqPointer()
```
  - setReferenceSeqPointer
```
public Sequence.SequenceReferenceSeqComponent setReferenceSeqPointer(Reference value)
```
    Parameters:
    
    value - referenceSeqPointer (A Pointer to another Sequence entity as refence sequence.)
  - getReferenceSeqPointerTarget
```
public Sequence getReferenceSeqPointerTarget()
```
    Returns:
    
    referenceSeqPointer The actual object that is the target of the reference. The reference library doesn't populate this, but you can use it to hold the resource if you resolve it. (A Pointer to another Sequence entity as refence sequence.)
  - setReferenceSeqPointerTarget
```
public Sequence.SequenceReferenceSeqComponent setReferenceSeqPointerTarget(Sequence value)
```
    Parameters:
    
    value - referenceSeqPointer The actual object that is the target of the reference. The reference library doesn't use these, but you can use it to hold the resource if you resolve it. (A Pointer to another Sequence entity as refence sequence.)
  - getReferenceSeqStringElement
```
public StringType getReferenceSeqStringElement()
```
    Returns:
    
    referenceSeqString (A Reference Sequence string.). This is the underlying object with id, value and extensions. The accessor "getReferenceSeqString" gives direct access to the value
  - hasReferenceSeqStringElement
```
public boolean hasReferenceSeqStringElement()
```
  - hasReferenceSeqString
```
public boolean hasReferenceSeqString()
```
  - setReferenceSeqStringElement
```
public Sequence.SequenceReferenceSeqComponent setReferenceSeqStringElement(StringType value)
```
    Parameters:
    
    value - referenceSeqString (A Reference Sequence string.). This is the underlying object with id, value and extensions. The accessor "getReferenceSeqString" gives direct access to the value
  - getReferenceSeqString
```
public String getReferenceSeqString()
```
    Returns:
    
    A Reference Sequence string.
  - setReferenceSeqString
```
public Sequence.SequenceReferenceSeqComponent setReferenceSeqString(String value)
```
    Parameters:
    
    value - A Reference Sequence string.
  - getWindowStartElement
```
public IntegerType getWindowStartElement()
```
    Returns:
    
    windowStart (0-based start position (inclusive) of the window on the reference sequence.). This is the underlying object with id, value and extensions. The accessor "getWindowStart" gives direct access to the value
  - hasWindowStartElement
```
public boolean hasWindowStartElement()
```
  - hasWindowStart
```
public boolean hasWindowStart()
```
  - setWindowStartElement
```
public Sequence.SequenceReferenceSeqComponent setWindowStartElement(IntegerType value)
```
    Parameters:
    
    value - windowStart (0-based start position (inclusive) of the window on the reference sequence.). This is the underlying object with id, value and extensions. The accessor "getWindowStart" gives direct access to the value
  - getWindowStart
```
public int getWindowStart()
```
    Returns:
    
    0-based start position (inclusive) of the window on the reference sequence.
  - setWindowStart
```
public Sequence.SequenceReferenceSeqComponent setWindowStart(int value)
```
    Parameters:
    
    value - 0-based start position (inclusive) of the window on the reference sequence.
  - getWindowEndElement
```
public IntegerType getWindowEndElement()
```
    Returns:
    
    windowEnd (0-based end position (exclusive) of the window on the reference sequence.). This is the underlying object with id, value and extensions. The accessor "getWindowEnd" gives direct access to the value
  - hasWindowEndElement
```
public boolean hasWindowEndElement()
```
  - hasWindowEnd
```
public boolean hasWindowEnd()
```
  - setWindowEndElement
```
public Sequence.SequenceReferenceSeqComponent setWindowEndElement(IntegerType value)
```
    Parameters:
    
    value - windowEnd (0-based end position (exclusive) of the window on the reference sequence.). This is the underlying object with id, value and extensions. The accessor "getWindowEnd" gives direct access to the value
  - getWindowEnd
```
public int getWindowEnd()
```
    Returns:
    
    0-based end position (exclusive) of the window on the reference sequence.
  - setWindowEnd
```
public Sequence.SequenceReferenceSeqComponent setWindowEnd(int value)
```
    Parameters:
    
    value - 0-based end position (exclusive) of the window on the reference sequence.
  - listChildren
```
protected void listChildren(List<Property> childrenList)
```
    Overrides:
    
    listChildren in class BackboneElement
  - getProperty
```
public Base[] getProperty(int hash,
                          String name,
                          boolean checkValid)
                   throws org.hl7.fhir.exceptions.FHIRException
```
    Overrides:
    
    getProperty in class BackboneElement
    
    Throws:
    
    org.hl7.fhir.exceptions.FHIRException
  - setProperty
```
public void setProperty(int hash,
                        String name,
                        Base value)
                 throws org.hl7.fhir.exceptions.FHIRException
```
    Overrides:
    
    setProperty in class BackboneElement
    
    Throws:
    
    org.hl7.fhir.exceptions.FHIRException
  - setProperty
```
public void setProperty(String name,
                        Base value)
                 throws org.hl7.fhir.exceptions.FHIRException
```
    Overrides:
    
    setProperty in class BackboneElement
    
    Throws:
    
    org.hl7.fhir.exceptions.FHIRException
  - makeProperty
```
public Base makeProperty(int hash,
                         String name)
                  throws org.hl7.fhir.exceptions.FHIRException
```
    Description copied from class: Base
    
    make an instance of a property. If the property is a repeating property, make a new instance. if the property is not repeating, return the property
    
    Overrides:
    
    makeProperty in class BackboneElement
    
    Returns:
    
    Throws:
    
    org.hl7.fhir.exceptions.FHIRException
  - addChild
```
public Base addChild(String name)
              throws org.hl7.fhir.exceptions.FHIRException
```
    Overrides:
    
    addChild in class BackboneElement
    
    Throws:
    
    org.hl7.fhir.exceptions.FHIRException
  - copy
```
public Sequence.SequenceReferenceSeqComponent copy()
```
    Specified by:
    
    copy in class BackboneElement
  - equalsDeep
```
public boolean equalsDeep(Base other)
```
    Overrides:
    
    equalsDeep in class BackboneElement
  - equalsShallow
```
public boolean equalsShallow(Base other)
```
    Overrides:
    
    equalsShallow in class BackboneElement
  - isEmpty
```
public boolean isEmpty()
```
    Specified by:
    
    isEmpty in interface org.hl7.fhir.instance.model.api.IBase
    
    Overrides:
    
    isEmpty in class BackboneElement
  - fhirType
```
public String fhirType()
```
    Specified by:
    
    fhirType in interface org.hl7.fhir.instance.model.api.IBase
    
    Overrides:
    
    fhirType in class BackboneElement

Class Sequence.SequenceReferenceSeqComponent

Field Summary

Fields inherited from class org.hl7.fhir.dstu2016may.model.BackboneElement

Fields inherited from class org.hl7.fhir.dstu2016may.model.Element

Constructor Summary

Method Summary

Methods inherited from class org.hl7.fhir.dstu2016may.model.BackboneElement

Methods inherited from class org.hl7.fhir.dstu2016may.model.Element

Methods inherited from class org.hl7.fhir.dstu2016may.model.Base

Methods inherited from class java.lang.Object

Methods inherited from interface org.hl7.fhir.instance.model.api.IBase

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseElement

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasExtensions

Methods inherited from interface org.hl7.fhir.instance.model.api.IBaseHasModifierExtensions

Field Detail

chromosome

genomeBuild

referenceSeqId

referenceSeqPointer

referenceSeqPointerTarget

referenceSeqString

windowStart

windowEnd

Constructor Detail

SequenceReferenceSeqComponent

SequenceReferenceSeqComponent

Method Detail

getChromosome

hasChromosome

setChromosome

getGenomeBuildElement

hasGenomeBuildElement

hasGenomeBuild

setGenomeBuildElement

getGenomeBuild

setGenomeBuild

getReferenceSeqId

hasReferenceSeqId

setReferenceSeqId

getReferenceSeqPointer

hasReferenceSeqPointer

setReferenceSeqPointer

getReferenceSeqPointerTarget

setReferenceSeqPointerTarget

getReferenceSeqStringElement

hasReferenceSeqStringElement

hasReferenceSeqString

setReferenceSeqStringElement

getReferenceSeqString

setReferenceSeqString

getWindowStartElement

hasWindowStartElement

hasWindowStart

setWindowStartElement

getWindowStart

setWindowStart

getWindowEndElement

hasWindowEndElement

hasWindowEnd

setWindowEndElement

getWindowEnd

setWindowEnd

listChildren

getProperty

setProperty

setProperty

makeProperty

addChild

copy

equalsDeep

equalsShallow

isEmpty

fhirType