ij.gui

Class PlotWindow

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Frame

ij.gui.ImageWindow

ij.gui.PlotWindow

All Implemented Interfaces:

RoiListener, ImageListener, ClipboardOwner, ActionListener, FocusListener, ItemListener, MouseWheelListener, WindowListener, WindowStateListener, ImageObserver, MenuContainer, Serializable, Runnable, EventListener, Accessible

public class PlotWindow
extends ImageWindow
implements ActionListener, ItemListener, ClipboardOwner, ImageListener, RoiListener, Runnable

This class implements the Analyze/Plot Profile command.

Author:

Michael Schmid, Wayne Rasband

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class java.awt.Frame

Frame.AccessibleAWTFrame

Nested classes/interfaces inherited from class java.awt.Window

Window.AccessibleAWTWindow, Window.Type

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field and Description
static boolean	autoClose Automatically close window after saving values.
static int	BOX Display points using an box-shaped mark.
static int	CIRCLE Display points using a circle 5 pixels in diameter.
static int	CROSS Display points using an cross-shaped mark.
static int	fontSize The plot text size, can be overridden by Plot.setFont, Plot.setFontSize, Plot.setXLabelFont etc.
static boolean	interpolate Interpolate line profiles.
static int	LINE Connect points with solid lines.
static boolean	listValues Display the XY coordinates in a separate window.
static boolean	noGridLines Have axes with no grid lines.
static boolean	noTicks Have axes with no ticks.
static int	plotHeight The height of the plot in pixels.
static int	plotWidth The width of the plot (without frame) in pixels.
static boolean	saveXValues Write first X column when listing or saving.
static int	TRIANGLE Display points using an tiangular mark.
static int	X Display points using an X-shaped mark.

Fields inherited from class ij.gui.ImageWindow

closed, HGAP, ic, ij, imp, MIN_HEIGHT, MIN_WIDTH, running, running2, setMenuBarTime, VGAP

Fields inherited from class java.awt.Frame

CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component

accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface ij.gui.RoiListener

COMPLETED, CREATED, DELETED, EXTENDED, MODIFIED, MOVED

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, PROPERTIES, SOMEBITS

Constructor Summary

Constructors

Constructor and Description
PlotWindow(ImagePlus imp, Plot plot) Creates a PlotWindow from a given ImagePlus with a Plot object.
PlotWindow(String title, String xLabel, String yLabel, double[] xValues, double[] yValues) Deprecated. replaced by the Plot class.
PlotWindow(String title, String xLabel, String yLabel, float[] xValues, float[] yValues) Deprecated. replaced by the Plot class.

Method Summary

Modifier and Type	Method and Description
void	actionPerformed(ActionEvent e) Called if user has activated a button or popup menu item
void	addErrorBars(float[] errorBars) Deprecated. use the corresponding method of the Plot class
void	addLabel(double x, double y, String label) Deprecated. use the corresponding method of the Plot class
void	addPoints(double[] x, double[] y, int shape) Deprecated. use the corresponding method of the Plot class
void	addPoints(float[] x, float[] y, int shape) Deprecated. use the corresponding method of the Plot class
void	changeFont(Font font) Deprecated. use the corresponding method of the Plot class
void	dispose() Releases the resources used by this PlotWindow
void	draw() Displays the plot.
void	drawPlot(Plot plot) Draws a new plot in this window.
static void	freeze() Freezes the active plot window, so the image does not get redrawn for zooming, setting the range, etc.
Plot	getPlot() Returns the Plot associated with this PlotWindow.
ResultsTable	getResultsTable() Returns the plot values as a ResultsTable.
float[]	getXValues()
float[]	getYValues()
void	imageClosed(ImagePlus imp) For live plots, if either the source image or this image are closed, exit live mode
void	imageOpened(ImagePlus imp)
void	imageUpdated(ImagePlus imp) For live plots, this method is called if the source image content is changed.
void	itemStateChanged(ItemEvent e) Called if the user activates/deactivates a CheckboxMenuItem
void	lostOwnership(Clipboard clipboard, Transferable contents)
void	mouseMoved(int x, int y) Updates the X and Y values when the mouse is moved and, if appropriate, shows/hides the overlay with the triangular buttons for changing the axis range limits Overrides mouseMoved() in ImageWindow.
void	mouseWheelMoved(MouseWheelEvent e) Mouse wheel: zooms when shift or ctrl is pressed, scrolls in x if space bar down, in y otherwise.
void	roiModified(ImagePlus img, int id) For live plots, update the plot if the ROI of the source image changes
void	run()
static void	savePreferences(Properties prefs) Called once when ImageJ quits.
void	setColor(Color c) Deprecated. use the corresponding method of the Plot class
void	setLimits(double xMin, double xMax, double yMin, double yMax) Deprecated. use the corresponding method of the Plot class
void	setLineWidth(int lineWidth) Deprecated. use the corresponding method of the Plot class
void	setPlot(Plot plot) Sets the Plot object shown in this PlotWindow.
void	windowActivated(WindowEvent e) Called when the window is activated (WindowListener) Window layout is finished at latest a few millisec after windowActivated, then the 'wasActivated' boolean is set to tell the ImageCanvas that resize events should lead to resizing the canvas (before, creating the layout can lead to resize events)

Methods inherited from class ij.gui.ImageWindow

add, centerNextImage, close, copy, createSubtitle, drawInfo, focusGained, focusLost, getCanvas, getImagePlus, getImageSize, getInitialMagnification, getInsets, getMaximumBounds, getSliderHeight, isClosed, maximize, minimize, paint, paste, setImage, setImageJMenuBar, setLocationAndSize, setNextLocation, setNextLocation, setSliderHeight, toString, updateImage, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened, windowStateChanged

Methods inherited from class java.awt.Frame

addNotify, getAccessibleContext, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, paramString, remove, removeNotify, setBackground, setCursor, setExtendedState, setIconImage, setMaximizedBounds, setMenuBar, setOpacity, setResizable, setShape, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, postEvent, processEvent, processWindowEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, setVisible, show, toBack, toFront

Methods inherited from class java.awt.Container

add, add, add, add, addContainerListener, addImpl, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, setLayout, transferFocusDownCycle, update, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphics, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setName, setPreferredSize, show, size, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer

getFont, postEvent

Field Detail

CIRCLE

public static final int CIRCLE

Display points using a circle 5 pixels in diameter.

See Also:

Constant Field Values

X

public static final int X

Display points using an X-shaped mark.

See Also:

Constant Field Values

BOX

public static final int BOX

Display points using an box-shaped mark.

See Also:

Constant Field Values

TRIANGLE

public static final int TRIANGLE

Display points using an tiangular mark.

See Also:

Constant Field Values

CROSS

public static final int CROSS

Display points using an cross-shaped mark.

See Also:

Constant Field Values

LINE

public static final int LINE

Connect points with solid lines.

See Also:

Constant Field Values

saveXValues

public static boolean saveXValues

Write first X column when listing or saving.

autoClose

public static boolean autoClose

Automatically close window after saving values. To set, use Edit/Options/Plots.

listValues

public static boolean listValues

Display the XY coordinates in a separate window. To set, use Edit/Options/Plots.

interpolate

public static boolean interpolate

Interpolate line profiles. To set, use Edit/Options/Plots.

plotWidth

public static int plotWidth

The width of the plot (without frame) in pixels.

plotHeight

public static int plotHeight

The height of the plot in pixels.

fontSize

public static int fontSize

The plot text size, can be overridden by Plot.setFont, Plot.setFontSize, Plot.setXLabelFont etc.

noGridLines

public static boolean noGridLines

Have axes with no grid lines. If both noGridLines and noTicks are true, only min&max value of the axes are given

noTicks

public static boolean noTicks

Have axes with no ticks. If both noGridLines and noTicks are true, only min&max value of the axes are given

Constructor Detail

PlotWindow

public PlotWindow(String title,
                  String xLabel,
                  String yLabel,
                  float[] xValues,
                  float[] yValues)

Deprecated. replaced by the Plot class.

PlotWindow

public PlotWindow(String title,
                  String xLabel,
                  String yLabel,
                  double[] xValues,
                  double[] yValues)

Deprecated. replaced by the Plot class.

PlotWindow

public PlotWindow(ImagePlus imp,
                  Plot plot)

Creates a PlotWindow from a given ImagePlus with a Plot object. (called when reading an ImagePlus with an associated plot from a file)

Method Detail

setLimits

public void setLimits(double xMin,
                      double xMax,
                      double yMin,
                      double yMax)

Deprecated. use the corresponding method of the Plot class

Sets the x-axis and y-axis range.

addPoints

public void addPoints(float[] x,
                      float[] y,
                      int shape)

Deprecated. use the corresponding method of the Plot class

Adds a set of points to the plot or adds a curve if shape is set to LINE. Note that there are more options available by using the methods of the Plot class instead.

Parameters:

x - the x-coodinates

y - the y-coodinates

shape - Plot.CIRCLE, X, BOX, TRIANGLE, CROSS, LINE etc.

addPoints

public void addPoints(double[] x,
                      double[] y,
                      int shape)

Deprecated. use the corresponding method of the Plot class

Adds a set of points to the plot using double arrays. Must be called before the plot is displayed. Note that there are more options available by using the methods of the Plot class instead.

addErrorBars

public void addErrorBars(float[] errorBars)

Deprecated. use the corresponding method of the Plot class

Adds vertical error bars to the plot. Must be called before the plot is displayed. Note that there are more options available by using the methods of the Plot class instead.

addLabel

public void addLabel(double x,
                     double y,
                     String label)

Deprecated. use the corresponding method of the Plot class

Draws a label. Note that there are more options available by using the methods of the Plot class instead.

setColor

public void setColor(Color c)

Deprecated. use the corresponding method of the Plot class

Changes the drawing color. The frame and labels are always drawn in black. Must be called before the plot is displayed. Note that there are more options available by using the methods of the Plot class instead.

setLineWidth

public void setLineWidth(int lineWidth)

Deprecated. use the corresponding method of the Plot class

Changes the line width. Must be called before the plot is displayed. Note that there are more options available by using the methods of the Plot class instead.

changeFont

public void changeFont(Font font)

Deprecated. use the corresponding method of the Plot class

Changes the font. Must be called before the plot is displayed. Note that there are more options available by using the methods of the Plot class instead.

draw

public void draw()

Displays the plot.

setPlot

public void setPlot(Plot plot)

Sets the Plot object shown in this PlotWindow. Does not update the window.

dispose

public void dispose()

Releases the resources used by this PlotWindow

Overrides:

dispose in class Window

windowActivated

public void windowActivated(WindowEvent e)

Called when the window is activated (WindowListener) Window layout is finished at latest a few millisec after windowActivated, then the 'wasActivated' boolean is set to tell the ImageCanvas that resize events should lead to resizing the canvas (before, creating the layout can lead to resize events)

Specified by:

windowActivated in interface WindowListener

Overrides:

windowActivated in class ImageWindow

actionPerformed

public void actionPerformed(ActionEvent e)

Called if user has activated a button or popup menu item

Specified by:

actionPerformed in interface ActionListener

itemStateChanged

public void itemStateChanged(ItemEvent e)

Called if the user activates/deactivates a CheckboxMenuItem

Specified by:

itemStateChanged in interface ItemListener

mouseMoved

public void mouseMoved(int x,
                       int y)

Updates the X and Y values when the mouse is moved and, if appropriate, shows/hides the overlay with the triangular buttons for changing the axis range limits Overrides mouseMoved() in ImageWindow.

Overrides:

mouseMoved in class ImageWindow

See Also:

ImageWindow.mouseMoved(int, int)

mouseWheelMoved

public void mouseWheelMoved(MouseWheelEvent e)

Mouse wheel: zooms when shift or ctrl is pressed, scrolls in x if space bar down, in y otherwise.

Specified by:

mouseWheelMoved in interface MouseWheelListener

Overrides:

mouseWheelMoved in class ImageWindow

getResultsTable

public ResultsTable getResultsTable()

Returns the plot values as a ResultsTable.

lostOwnership

public void lostOwnership(Clipboard clipboard,
                          Transferable contents)

Specified by:

lostOwnership in interface ClipboardOwner

getXValues

public float[] getXValues()

getYValues

public float[] getYValues()

drawPlot

public void drawPlot(Plot plot)

Draws a new plot in this window.

savePreferences

public static void savePreferences(Properties prefs)

Called once when ImageJ quits.

roiModified

public void roiModified(ImagePlus img,
                        int id)

For live plots, update the plot if the ROI of the source image changes

Specified by:

roiModified in interface RoiListener

imageOpened

public void imageOpened(ImagePlus imp)

Specified by:

imageOpened in interface ImageListener

imageUpdated

public void imageUpdated(ImagePlus imp)

For live plots, this method is called if the source image content is changed.

Specified by:

imageUpdated in interface ImageListener

imageClosed

public void imageClosed(ImagePlus imp)

For live plots, if either the source image or this image are closed, exit live mode

Specified by:

imageClosed in interface ImageListener

run

public void run()

Specified by:

run in interface Runnable

getPlot

public Plot getPlot()

Returns the Plot associated with this PlotWindow.

freeze

public static void freeze()

Freezes the active plot window, so the image does not get redrawn for zooming, setting the range, etc.