ij.plugin

Class ZAxisProfiler

java.lang.Object

ij.plugin.ZAxisProfiler

All Implemented Interfaces:

PlotMaker, Measurements, PlugIn

public class ZAxisProfiler
extends Object
implements PlugIn, Measurements, PlotMaker

Implements the Image/Stacks/Plot Z-axis Profile command, which plots the selection mean gray value versus slice number.

Field Summary

Fields inherited from interface ij.measure.Measurements

ADD_TO_OVERLAY, ALL_STATS, AREA, AREA_FRACTION, CENTER_OF_MASS, CENTROID, CIRCULARITY, ELLIPSE, FERET, INTEGRATED_DENSITY, INVERT_Y, KURTOSIS, LABELS, LIMIT, MAX_STANDARDS, MEAN, MEDIAN, MIN_MAX, MODE, NaN_EMPTY_CELLS, PERIMETER, RECT, SCIENTIFIC_NOTATION, SHAPE_DESCRIPTORS, SKEWNESS, SLICE, STACK_POSITION, STD_DEV

Constructor Summary

Constructors

Constructor and Description
ZAxisProfiler()

Method Summary

Modifier and Type	Method and Description
Plot	getPlot() Returns a profile plot.
static Plot	getPlot(ImagePlus imp) Returns a Plot of the selection mean gray value versus slice number.
static Plot	getPlot(ImagePlus imp, String options) Returns a Plot of the selection mean versus slice number for the specified hyperstack, where 'options' can be "time" or "z-axis".
ImagePlus	getSourceImage() Returns the ImagePlus used to generate the profile plots.
void	run(String arg) This method is called when the plugin is loaded.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ZAxisProfiler

public ZAxisProfiler()

Method Detail

getPlot

public static Plot getPlot(ImagePlus imp)

Returns a Plot of the selection mean gray value versus slice number.

getPlot

public static Plot getPlot(ImagePlus imp,
                           String options)

Returns a Plot of the selection mean versus slice number for the specified hyperstack, where 'options' can be "time" or "z-axis".

run

public void run(String arg)

Description copied from interface: PlugIn

This method is called when the plugin is loaded. 'arg', which may be blank, is the argument specified for this plugin in IJ_Props.txt.

Specified by:

run in interface PlugIn

getPlot

public Plot getPlot()

Description copied from interface: PlotMaker

Returns a profile plot.

Specified by:

getPlot in interface PlotMaker

getSourceImage

public ImagePlus getSourceImage()

Description copied from interface: PlotMaker

Returns the ImagePlus used to generate the profile plots.

Specified by:

getSourceImage in interface PlotMaker